FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index13_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 21035017 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 5517315 | 3.0014088 | 4.617564 | 2 |
| CCAGG | 4417615 | 2.586085 | 5.056497 | 1 |
| CCTGG | 4385625 | 2.5577755 | 5.949946 | 1 |
| GAAGA | 4384750 | 2.5120392 | 5.036464 | 2 |
| CTTCT | 4542960 | 2.4971101 | 5.3830967 | 1 |
| CTGGA | 4169920 | 2.405869 | 8.764729 | 1 |
| TCCAG | 4109980 | 2.3357618 | 5.5990252 | 2 |
| CTCCT | 4106640 | 2.2903192 | 7.3785725 | 1 |
| CTGGG | 3780240 | 2.2382352 | 8.2587185 | 1 |
| CAGGA | 3838780 | 2.2231128 | 5.548266 | 1 |
| CTTCA | 3959850 | 2.1847486 | 5.8031707 | 1 |
| CTCCA | 3855785 | 2.158471 | 8.013168 | 1 |
| CCCAG | 3731995 | 2.1519916 | 7.0645876 | 1 |
| CAGAA | 3663290 | 2.0672712 | 5.0791597 | 1 |
| CTCTG | 3524535 | 1.9955685 | 6.1280985 | 1 |
| CTGGC | 3234805 | 1.8865967 | 5.421403 | 1 |
| TGGAA | 3228520 | 1.8427271 | 5.2913966 | 2 |
| CTGAA | 3229060 | 1.8154248 | 5.2656527 | 1 |
| CTCAG | 3030270 | 1.7221467 | 6.2230587 | 1 |
| CTTGG | 2829155 | 1.6262115 | 5.4051204 | 1 |